Retrofit's alignment tool does not allow me to split or merge segments

Title says it all. Is there some way to get around this? I want to split and merge segments for the following reason: Sometimes, in my original translation in Trados, there will be two periods in a segment. However, when I am retrofitting the translation back into Trados, this segment is shown as two segments, and the option to connect these "two" segments to the original single segment is greyed out. A similar problem arises when the target file has had a period added for whatever reason. 

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