paragraphs, bookmarks, index, footnote

Hello,

maybe my request for help is too late anyway as I'm almost finished but here it comes.

I'm translating a thesis with loads of bookmarks and other formatting.

At first I just started and took all the tags given. Very late I checked the result at the preview and found that the whole document is a mess now as the bookmarks and paragraphs don't adapt to the new proportions of my translated documents.

Even more I realise that the document has made paragraphs in the middle of One Sentence! So I can't fuse them...

Now it has sometimes a half empty page, then in the middle of the page the footnote dividing line.

What can I do now in order to fix this?

Or do I have to deal with after translating with Trados?

Thank you beforehand!

Ela